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NMRWish Command List |
| readROI | Read a Region of Interest (ROI) |
| writeROI | Write a Region of Interest (ROI) |
| defineCell | Define a Drawing Area (Cell) on a Window or Page |
| drawROI | Draw a Region of Interest (ROI) |
| drawBox | Draw a Box |
| drawLine | Draw a Line |
| drawRec | Draw a Filled Rectangle |
| drawText | Draw a Line of Text |
| newScreen | Clear the Display Area |
| drawSettings | Adjust Draw Settings |
| getROIInfo | Get Info on a Region of Interest (Cell) |
| getCellInfo | Get Info on a Drawing Area (Cell) |
| setCellKey | Associate Data with a Drawing Area (Cell) |
| setROIKey | Associate Data with a Region of Interest (ROI) |
| pkFindROI | 1D-4D Peak Detection in Region of Interest (ROI) |
| plotClose | Close a PostScript Output File |
| plotOpen | Open a PostScript Output File |
| plotSend | Send a PostScript Plot to a Printer |
| plotSettings | Adjust PostScript Settings |
| plotWrite | Write to the Current PostScript Output File |
| writeImage | Write an Image File from Screen or Data |
| pnt2spec | Convert Point Location to Spectral Coord |
| pnt2specW | Convert Width in Points Spectral Units |
| spec2pnt | Convert a Coord in Spectral Units to Points |
| spec2pntW | Convert a Width in Spectral Units to Points |
| spec2pix | Convert Spectral Coords to Graphics Coords |
| pix2spec | Convert Graphics Coords to Spectral Coords |
| freeCell | Free a Drawing Area (Cell) |
| freeROI | Free a Region of Interest (ROI) |
| gdbAddNote | Add Text Notation to a Database or Table |
| gdbAppend | Append Two Tables |
| gdbCheck | Check Integrity of a Database or Table |
| gdbCreate | Create a GDB Database Object |
| gdbDelNote | Delete A Text Notation |
| gdbDestroy | Destroy a GDB Database Object |
| gdbEast | Get the Item to the East |
| gdbFind | Find a GDB Database Object |
| gdbFindByName | Find a GDB Database Object by Name |
| gdbFirst | Get the First Item Associated with a Database Object |
| gdbGet | Get a Database Value |
| gdbGetInfo | Get Properties of a Database Object |
| gdbInit | Initialize the GDB Database Engine |
| gdbJoin | Join Two Tables |
| gdbLast | Get the Last Item Associated with a Database Object |
| gdbNext | Get the Next Item |
| gdbNorth | Get the Item to the North |
| gdbPrev | Get the Previous Database Item |
| gdbRead | Read a Database, GDB Table, or PDB File |
| gdbReverse | Reverse the Items in a Database Object |
| gdbSelect | Perform a Database Query |
| gdbSet | Set a Database Value |
| gdbSetInfo | Set Properties of a Database Object |
| gdbSort | Sort a Database Table |
| gdbSouth | Get the Item to the South |
| gdbSpecial | Special-Purpose Functions |
| gdbSwap | Swap Database Objects |
| gdbTest | Test for Missing Values in Entry |
| gdbTestVal | Test for Missing Values in Cells |
| gdbWest | Get the Item to the West |
| gdbWrite | Write a Database, GDB Table, or PDB File |
| dynAlign | Calculate Optimal Alignment of Two Structures |
| dynCopy | Copy Structure Coordinates |
| dynCreate | Create a DYNAMO Object |
| dynDestroy | Destroy DYNAMO Object |
| dynDynamics | Initiate or Continue Dynamics Steps |
| dynEnergy | Calculate a Dynamics Energy Term |
| dynFree | Deallocate a DYNAMO Object |
| dynGet | Get Properties of a DYNAMO Object |
| dynGetDist | Get Distance Info from a Structure |
| dynGetInfo | Get General Info from a Structure |
| dynGetPhiPsi | Get Protein Backbone Angles |
| dynHomology | Get a Homology Score |
| dynInit | Initialize DYNAMO Structre Manipulation Engine |
| dynRead | Read a DYNAMO Structure or Table |
| dynRestore | Restore Coordinates or Settings |
| dynRotate | Rotate Selected Atoms |
| dynSelect | Select Atoms from a Structure |
| dynSet | Set Properties of a DYNAMO Object |
| dynSetChainID | Set the ChainID of Selected Atoms |
| dynSetPhiPsi | Set Protein Backbone Angles |
| dynSetTemperature | Set Temperature for Dynamics |
| dynSimulate | Simulation of Table Data (Shifts, Couplings, etc) |
| dynStore | Save Coordinates or Settings |
| dynSurface | Get a Ramachandran Score |
| dynTransform | Create, Adjust, or Apply a Coordinate Transform |
| dynTranslate | Translate (Move) Selected Atoms |
| dynWrite | Write a DYNAMO Structure or Table |
| getParm | Extract a Numeric Value from an NMRPipe Header |
| setParm | Set a Numeric Value in an NMRPipe Header |
| getParmStr | Extract a Text Value from an NMRPipe Header |
| setParmStr | Set a Text Value in an NMRPipe Header |
| buildHdr | Create an NMRPipe Header |
| fixHdr | Fix Contents of NMRPipe Header |
| testHdr | Test NMRPipe Header for Byteswap |
| swapHdr | Apply Byteswap to NMRPipe Header |
| nmrInit | Initialize an NMRPipe Processing Function |
| nmrExec | Apply an NMRPipe Processing Function |
| nmrFree | Free an NMRPipe Processing Function |
| getBinary | Get a Binary Value a Hex Data |
| setBinary | Set a Binary Value by Hex Data |
| getMatVal | Get a Value from a Binary Matrix |
| getPtr | Get the Numeric Value Referenced by a Pointer |
| getPtrStr | Get the Text Value Referenced by a Pointer |
| getPtrVal | Get the Numeric Value Referenced by a Pointer |
| setMatVal | Set a Value in a Binary Matrix |
| setPtr | Set the Numeric Referenced by a Pointer |
| setPtrStr | Set the Text Value Referenced by a Pointer |
| setPtrVal | Set the Numeric Referenced by a Pointer |
| incrPtr | Increment a Pointer by its Value |
| incrPtrVar | Increment a Pointer by its Variable Name |
| sysClose | Close a Binary File |
| sysFree | Free Allocated Data |
| sysMalloc | Allocate Data |
| sysOpen | Open a Binary File |
| sysRead | Read from a Binary File |
| sysReadB | Read from a Binary File, Wait for Completion |
| sysSeek | Seek a Position in a Binary File |
| sysWrite | Write to a Binary File |
| sysWriteB | Write to a Binary File, Wait for Completion |
| sysTime | Get the Current Date and Time |
| system | Execute a Command in the Operating System |
| vvMove | Move Elements from One Vector to Another |
| vvMove2 | Move Dispersed Elements from One Vector to Another |
| vSurface | Calculate 2D Gaussian Surface |
| vInterp | 1D Interpolation |
| vLinSol | Linear Least Squares Solver via SVD (Binary) |
| vAbsCor | Spectral Absorbance Correction |
| vvCast | Convert Vector Binary Format |
| vEstNoise | Return Noise Estimate |
| vMaxAbs | Return Maximum Absolute Value |
| vMaxLoc | Return Location of Maximum Absolute Value |
| vMinAbs | Return Minimum Absolute Value |
| vMinLoc | Return Location of Minimum Absolute Value |
| vMax | Return Maximum Value |
| vMin | Return Minimum Value |
| vSum | Return Sum |
| vACos | Arc-Cosine of Elements in Vector |
| vASin | Arc-Sine of Elements in Vector |
| vAbs | Absolute Value of Elements in Vector |
| vByteSwap | Byte Swap of Elements in Vector |
| vCos | Cosine of Elements in Vector |
| vExp | Exponential of Elements in Vector |
| vLog | Log of Elements in Vector |
| vNeg | Negative of Elements in Vector |
| vRev | Reverse Order of Elements in Vector |
| vSin | Sine of Elements in Vector |
| vsAdd | Add a Constant to Vector |
| vsDiv | Divide Vector by a Constant |
| vsFix | Zero Vector Elements Within +/- Threshold |
| vsMult | Multiply Vector by a Constant |
| vsPower | Raise Vector Elements to a Power |
| vsSet | Set Vector Elements to a Constant |
| vsSub | Subtract a Constant from Vector |
| vvAdd | Add Vector Elements |
| vvDiv | Divide Vector Elements |
| vvMult | Multiply Vector Elements |
| vvSub | Subtract Vector Elements |
| vvSwap | Swap Vector Elements |
| svdLinSol | Linear Least Squares Solver via SVD (Text) |
| strcasecmp | Compare Two Strings (Not Case Sensitive) |
| strcmp | Compare Two Strings (Case Sensitive) |
| rand | Generate a Uniform or Gauss-Random Number |
| srand | Set the Random Number Seed |