furanku

NMRWish Command List

drawROI

Draw a Region of Interest (ROI)



Command-Line Argument List


drawROI: Draw a Region of Interest (ROI).
Arguments for Displaying a Region of Interest (ROI):
  -roi roiID       ID Number of ROI to Draw;
                   Default is Current ROI.
 Contour Parameters:
  -plev     [10] Positive Contour Count.
  -nlev     [10] Negative Contour Count.
  -mult    [1.3] Contour Level Factor.
  -hi     [Full] First Contour Height;
                 Use a Number, or a Keyword:
                  Full   = Full Dynamic Range.
                  Auto   = Use Auto Noise Estimate.
                  Freeze = Use Previous Height Value.
Contour Line Style:
  -dashPos       Dashed Lines for Positive Data Only.
  -dashNeg       Dashed Lines for Negative Data Only.
  -dash          Dashed Lines for All Data.
  -nodash        No Dashed Lines (Default).
 Display Modes:
  -cont          Draw Contour Display.
  -pix           Draw PixMap Display.
  -dot           Draw Dot Display.
  -stack         Stack Plot Display.
  -scat          ROI vs ROI Scatter Plot Display;
                 Requires -roi2 option.
Stack Plot Parameters:
  -fill [0.8]      Width fraction of 1D plots.
  -rise [0.5]      Height fraction of 1D plots.
  -inc  [1]        1D Index Increment.
  -yAux yMin yMax  Graphics limits for Stack Height.
 Scatter Plot Parameters:
  -roi1 roiID1     ID Number of ROI 1 for Plot;
                   Same as -roi option.
  -roi2 roiID2     ID Number of ROI 2 for Plot.
  -roi3 roiID3     ID Number of Optional ROI 3,
                   used to Colorize the Plot.
 1D Drawing and Orientation:
  -top             Horizontal 1D.
  -bottom          Horizontal 1D.
  -left            Vertical 1D.
  -right           Vertical 1D.
  -zero            Draw Zero Line.
 Axis Drawing:
  -axis axList [None]   Full-Axis Keyword List:
                        Left Right Bottom Top None;
                        follow with comma-seperated
                        Manual Axis keyword/values.
  -tic  axList [None]   Center-Tic Axis Keyword List:
                        Left Right Bottom Top None
  -xGrid axInfo         Draw Grid for X-Axis;
                        Follow with comma-seperated
                        Manual Axis keyword/values.
  -yGrid axInfo         Draw Grid for X-Axis;
                        Follow with comma-seperated
                        Manual Axis keyword/values.
 Manual Axis Keyword/Value Pairs:
  units=                Axis units keyword (PPM, etc).
  orig=                 Axis origin value.
  end=                  Axis endpoint value.
  step=                 Axis step value.
  tic=                  Axis tic count.
  fmt=                  Axis print format (%f etc).
  lab=                  Axis label.
Arguments for Defining a Cell (2D Graphics Region):
  -x    x1 x3     X Display Limits, First and Last.
  -dx   x1 xWide  X Display Limits, First and Width.
  -ux   x1 xAsp   X Display Limits, First and Aspect.
  -y    y1 y3     Y Display Limits, First and Last.
  -dy   y1 yWide  Y Display Limits, First and Width.
  -uy   y1 yAsp   Y Display Limits, First and Aspect.
  -subw nX nY X Y Sub-Window Grid Location.
General Graphics Arguments:
  -reset             Restore Default Settings.
  -screen            Screen Graphics ON (default).
  -page              Hardcopy Graphics ON.
TCL/TK Graphics Window Arguments:
  -win      wID [1]  Canvas Window ID.
  -update            Flush graphics after drawing.
  -noupdate          Don`t flush graphics after drawing.
 Graphics Size and Justification:
  -xOff xOff  [0.0]  Additional X Offset;
                     Default Unit is Character Size.
  -yOff yOff  [0.0]  Additional Y Offset;
                     Default Unit is Character Size.
  -thick             Use thick line width.
  -thin              Use thin line width.
  -big               Use larger Font Size.
  -small             Use smaller Font Size.
  -left              Left-Justify (Default).
  -right             Right-Justify (Hard-Copy Only).
  -center            Centered (Hard-Copy Only).
  -rotate deg [0.0]  Rotation, Degrees (Hard-Copy Only).
 Graphics Coords In Terms of ROI Spectral Location:
  -roiX   roiXID     ROI ID for Graphic X Coord.
  -roiY   roiYID     ROI ID for Graphic Y Coord.
  -roiRef roiID      Sets Both -roiX and -roiY.
 Graphics Coords In Terms of Existing Cell:
  -cellX  cellXID   Cell ID for Graphic X Coord.
  -cellY  cellYID   Cell ID for Graphic Y Coord.
  -cell   cellID    Sets Both -cellX and -cellY.
  -clip             Clip to Extent of Cell.
  -noclip           No Clipping.
 Bounding Box:
  -box                   Draw Bounding Box.
  -nobox                 No Bounding Box.
Hard Copy Plot Settings:
 -plotName   pName  [roi.ps]     PostScript Output Name.
 -plotCmnd   pCmnd  [echo]       Printing Command.
 -plotFont   pFont  [Helvetica]  Font Name.
Hard Copy Color Use:
 -color                          Color PostScript.
 -gray                           Grayscale (Default).
 -bw                             Solid Black/White Only.
Opening and Closing Plot File:
 -text       line                Insert text into file.
 -only                           Open/Close only.
Paper Type and Orientation:
 -paper      pType  [A]          Paper Type (see below).
 -tray       tNum   [0]          Paper Tray.
 -landscape                      Landscape (default).
 -portrait                       Portrait.
Paper Size-to-Pixel Conversion (Use Only One):
 -ppi        ppiVal [720]        Pixels per inch.
 -ppc        ppcVal [283]        Pixels per centimeter.
Accessible Page Limits, in Units of inches, cm, or mm:
 -pageX1     px1    [1/8]        Page Limit X1.
 -pageY1     py1    [1/8]        Page Limit Y1.
 -pageX3     px3    [pWi - 1/8]  Page Limit X3.
 -pageY3     py3    [pHi - 1/8]  Page Limit Y3.
Hard Copy Font Sizes, in Units of inches, cm, or mm:
 -c1Width    ch1w   [0.10in]     Regular Font Width.
 -c1Height   ch1h   [0.14in]     Regular Font Height.
 -c2Width    ch1w   [0.14in]     Large Font Width.
 -c2Height   ch1x   [0.20in]     Large Font Height.
Line Thickness, in Printer Points:
 -lw1        lw1    [0.1]        Thin linewidth (grids).
 -lw2        lw2    [1.0]        Thick linewidth (boxes).
 -lwPlus     lwp    [0.1]        Positive contour width.
 -lwMinus    lwm    [1.0]        Negative contour width.
Paper Size (Set Automatically by Paper Type/Orientation):
 -pageWidth  pWi    [11.0in]     Page Width.
 -pageHeight pHi    [8.5in]      Page Height.
Paper Types:
 Size A1  59.40 x  84.10 cm
 Size A2  42.00 x  59.40 cm
 Size A3  29.70 x  42.00 cm
 Size A4  21.00 x  29.70 cm
 Size A5  14.80 x  21.00 cm
 Size A6  10.50 x  14.80 cm
 Size A7   7.40 x  10.50 cm
 Size  A   8.50 x  11.00 inches
 Size  B  11.00 x  17.00 inches
 Size  C  17.00 x  22.00 inches
 Size  D  22.00 x  34.00 inches
 Size  E  34.00 x  44.00 inches
 Size  U  10.00 x  10.00 inches
 Color and Overlay Options:
  -fg     fgClr [yellow]  Foreground Color Name.
  -bg     bgClr [none]    Background Color Name.
  -mask   mVal  [-1]      Plane Mask; -1=All Planes.
  -x11GX  xID   [copy]    X11 Draw Mode ID/Keyword.
 ROI Drawing Color Parameters:
  -color1 pClr  [Multi]   Color for Positive Levels.
  -color2 nClr  [Multi]   Color for Negative Levels.
  -colorA aClr  [yellow]  Color for Axis Text Drawing.
  -colorS sClr  [black]   Color for Axis Text Shadow.
  -colorG gClr  [dimGray] Color for Grid Drawing.
  -plane        [0]       Overlay Plane to Use.
Positive Level HSV Color Vector:
 -pcc   pCount      [10]  Positive Color Count.
 -pHue1 hue         [0.5] First Hue [0-1].
 -pHueN hue         [0.7] Last Hue  [0-1].
 -pSat1 saturation  [0.8] First Saturation [0-1].
 -pSatN saturation  [1.0] Last Saturation  [0-1].
 -pVal1 value       [1.0] First Value [0-1].
 -pValN value       [1.0] Last Value  [0-1].
Negative Level HSV Color Vector:
 -ncc   nCount      [10]  Negative Color Count.
 -nHue1 hue         [0.5] First Hue [0-1].
 -nHueN hue         [0.7] Last Hue  [0-1].
 -nSat1 saturation  [0.8] First Saturation [0-1].
 -nSatN saturation  [1.0] Last Saturation  [0-1].
 -nVal1 value       [1.0] First Value [0-1].
 -nValN value       [1.0] Last Value  [0-1].
Arguments for Report Generation:
  -noverb            Verbose Mode Off.
  -verb              Verbose Mode On.
Notes on Graphics Coordinates:
  X Coord Increases from Left to Right.
  Y Coord Increases from Top to Bottom.
  No Label = Pixels, Absolute Coordinate.
  pix      = Pixels, Absolute Coordinate.
  in       = Inches, Relative to Cell.
  cm       = Centimeter, Relative to Cell.
  mm       = Millimeter, Relative to Cell.
  c1       = Char Size of Small Font, Relative to Cell.
  c2       = Char Size of Big Font, Relative to Cell.
  %       = Percent of Screen, Relative to Cell.
Notes on Display Region Aspect Ratios:
   [ppm|Hz|Pts|%]/[Pix|In|cm|mm|c1|c2|%]