Bax Group DC Server - Calculate Dipolar Couplings from PDB Structure

	From the Bax Group at the National Institutes of Health DC: Servers for Residual Dipolar Coupling Calculations Dipolar Couplings Calculation from Known Tensor and PDB Structure

About DC: Server-Based Tools for Dipolar Coupling Calculations
NMR Server PDB Utilities to Add Protons, Align Structures, etc
NMRPipe Table Format

DC Server Site:	http://spin.niddk.nih.gov/bax-apps/nmrserver/dc/
Contacts:	ShenYang@niddk.nih.gov bax@nih.gov

Bax Group > NMR Server > DC Server > Calculate RDCs

PDB Input

PDB Input: Atom names in the PDB format file must exactly match names used in the RDC input file. Example: ubiq.pdb

PDB Ensemble Input: Must be preprared in a single PDB file and with the MODEL/ENDMDL keywords to indicate multiple conformers, see example: 2mjb.pdb

Select this option to add H atoms to the input PDB file, hydrogen atoms will be replaced if already present. [More Info]

Add hydrogens to PDB

Options

Select residues for alignment tensor calculation, as a list of residue numbers or ranges separated by spaces. [More Info]

Residue Selection:

Align conformers to the first one (for CA, C, N atoms). See more alignment options here.

Align Conformers in PDB Ensemble

Submission Details

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last update: June 2026