Bax Group PDB Utilities Server - Coordinate Alignment of PDB Structures

Reference PDB Input: input containing the fixed-coordinate reference structure. If the PDB file contains more than one model, the first model will remain fixed, and the remaining models will each be rotated and translated to optimize the coordinate alignment with the first model. Multiple models should be separated by ENDMDL or END lines.

Other PDB Input(s): the structures in this PDB file will be rotated and translated to optimize the coordinate alignment with the first model in the Reference PDB Input above. This option is optional IF the Reference PDB Structure above contains more than one model.

PDB inputs Reference PDB Input: input containing the fixed-coordinate reference structure. If the PDB file contains more than one model, the first model will remain fixed, and the remaining models will each be rotated and translated to optimize the coordinate alignment with the first model. Multiple models should be separated by ENDMDL or END lines. Other PDB Input(s): the structures in this PDB file will be rotated and translated to optimize the coordinate alignment with the first model in the Reference PDB Input above. This option is optional IF the Reference PDB Structure above contains more than one model.
Align Options Atoms used for the coordinate alignment Atom Selection: Residue Selection Residues for coordinate alignment, as paired ranges separated by spaces, e.g., 2 8 11 11 13 72 for residues 2 to 8, 11, and 13 to 72. All residues will be used if left blank Range: A maximal subset of the residues clustered within the given distance cutoff for coordinate alignment, as selected by an iterative MaxSub procedure. MaxSub Selected Distance Cutoff: Å
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