Add Protons to an Existing PDB Structure
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(Currently for Proteins Only) Given an existing PDB structure with heavy atoms,
this server will create a new version of the PDB which includes H atoms.
The advanced options can also be used to help resolve steric clashes.
Server: http://spin.niddk.nih.gov/bax/nmrserver/pdbutil/sa.html
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Coordinate Alignment of Related Structures in a PDB File
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This server reads a PDB file with multiple structures, and performs an atomic coordinate
alignment so that each structure is overlayed with the first one.
Server: http://spin.niddk.nih.gov/bax/nmrserver/pdbutil/ov.html
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List and Graph Secondary Structure Information
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(Proteins Only) This server reads a PDB file, and tabulates and graphs
information about the backbone and sidechain torsions, hydrogen bonds,
and secondary structure. It also returns simple estimates of the mass,
solvent-accessible surface area, volume, and radius of gyration.
Server: http://spin.niddk.nih.gov/bax/nmrserver/pdbutil/ss.html
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