Input Files and Parameters
[Input Sample]
# Default Uncertainties for input parameters; these may be modified as appropriate
DATA ERROR_1JCaHa  0.40 #  J uncertainties are in Hz
DATA ERROR_1JNCa   0.20             
DATA ERROR_2JCaN   0.20
DATA ERROR_3JCC    0.08
DATA ERROR_3JHNHa  0.20
DATA ERROR_3JCHa   0.10
DATA ERROR_C       0.25 # Chemical shift uncertainties are in ppm
DATA ERROR_CA      0.25             
DATA ERROR_N       0.80
DATA ERROR_R       0.15 # Cross relaxation rates, R, are in s^-1. Actual uncertainties used by MERA is calculated 
                        # as the fractional error in R added to the same fraction of the intraresidue HN-Ha rate.
                        #            (see Table 1 of the paper for the details)

# [Required] Full protein sequence
DATA SEQUENCE MDVFMKGLSK AKEGVVAAAE KTKQGVAEAA GKTKEGVLYV GSKTKEGVVH
DATA SEQUENCE GVATVAEKTK EQVTNVGGAV VTGVTAVAQK TVEGAGSIAA ATGFVKKDQL
DATA SEQUENCE GKNEEGAPQE GILEDMPVDP DNEAYEMPSE EGYQDYEPEA

DATA FIRST_RESID  1     # [Optional] The residue number of the first residue in the protein sequence, such that
                        # the RESID field of the example input file matches that of the protein sequence
                        #            = 1 if not defined

# [Required] Headers for the data section, DON't modify unless you know what you are doing
VARS   RESID RESNAME CA C N 1JCaHa 1JNCa 2JCaN 3JHNHa 3JCC 3JCHa HNHAintra HNHAseq HNHNseq J0 
FORMAT %3d %3s  %8.3f %8.3f %8.3f  %7.3f %7.3f %7.3f %7.3f %7.3f %7.3f  %6.4f %6.4f %6.4f  %.f

# [Required] Data section. For those missing data, "0" must be used (DON'T leave blank!!!)
 19   A    52.739  178.184  123.163  144.700  10.740   7.860   5.280   0.72  1.84  0.2060 0.5590 0.1200  0.71e-9
133   Y    58.127  175.721  120.346  143.700  11.220   7.930   6.770   0.95  2.30  0.1590 0.6470 0.0980  0.60e-9
# NOTE that for a given residue, the NOE data should be listed as HNHAintra[i,i] HNHAseq[i,i-1] and HNHNseq[i,i+1]
#     , and provided as experimental cross-relaxation rates [(I_crosspeak/I_diagonalpeak)/Tmix].

[?] List of theta values to be run, separated by a space, such as:
0.0 0.1 0.2 0.4 0.8 1.6
[?] Local diffusion anisotropy parameter (range 0-2; use 0 for isotropic ordered proteins, use ~1.0 for IDP)
Use HNHA Intra-residue Cross Relaxation Rate Default value: no (if flag is not marked, J(0) is then required)

15°x15° Predictions are made for populated 15°x15° voxels in Ramachandran Map     30°x30° Predictions are made for populated 30°x30° voxels in Ramachandran Map
 
Submission Details
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last update: Oct 26th, 2015