Scripts of the NMRPipe System
pdb2ac.tcl: Create DYNAMO atomic coord (AC) restraint table from PDB.

Flag Argument Default Description  -in pdbName ref.pdb PDB Input for Coords.  -ref seqName None PDB Input for Sequence (If Different).  -r1 r1 First First Residue for Sequence PDB.  -rN rN Last Last Residue for Sequence PDB.  -a1 a1 r1 First Residue for Coord PDB.  -id id 1 First Index Number for Restraint Output.  -seg segName PROT Segment Name for Restraint Output.  -dLo dLo 0.0 Lower Distance Bound.  -dHi dHi 0.0 Upper Distance Bound.  -fc fc 10.0 Restraint Force Constant.  -atom aList C* ... Atom Name List. Default: C* N* O* S* P* F*  -dx dx 0.0 Additional X-Axis Offset.  -dy dy 0.0 Additional X-Axis Offset.  -dz dz 0.0 Additional X-Axis Offset.  -hetatm Include HETATM entries from PDB Input.  -nohetatm Ignore HETATM entries (Default).  -center Center Coords of PDB Input.  -nocenter No Centering of PDB Input (Default).  -hdr Print Header in Output (Default).  -nohdr No Header in Output.  -na Interpret Sequence for DNA/RNA. Also -dna -rna  -nona No Adjustment for DNA/RNA (Default). Coordinate Modes (Use Only One):  -fixed Fragment Coords are Fixed (Default).  -nofixed Fragment Can Translate and Rotate.  -rotfixed Fragment Can Translate Only. Multiple Fragment Mode (Zero for Single Fragment Mode):  -segLength sLength 0 Segment Length of Fragments.  -segStep sStep 0 Offset Between Fragments.  -equiv Include All Tensor-Equivalent Rotations.  -excl resList None Starting Res IDs Not to Rotate. Notes:   Multiple Fragment Mode Uses '-nofixed' Coordinate Mode by Default.