Scripts of the NMRPipe System
orientDC.tcl: Find Optimal Orientation for Two Domains Using Dipolar Couplings.

Flag Argument Default Description  -ref refPDBName ref.pdb Reference (Fixed) PDB Input File.  -pdb rotPDBName rot.pdb PDB Input File To Be Rotated.  -dc dcNameList dObs*.tab DC Input Tables.  -tab tabName orient.tab Output Table of Orientation Maxima.  -save Save Surfaces surf*/r%03d.dat  -nosave No Surface File Output (Default).  -verb Verbose Mode ON (Default).  -noverb Verbose Mode OFF.  -ignore Ignore Seg/Chain Information.  -exit Exit After Grid Search is Complete. PDB Output Templates:  -or orPDBName orient%d.pdb Output of Rotated PDB.  -out outName complex%d.pdb Output of Rotated PDB and Ref.  -n bestCount 2 Number of Orientations to Save. Rotation Grid Search Parameters, Degrees:  -rx1 rx1 -180.0 X-Axis Starting Rotation.  -rxn rxn 180.0 X-Axis Ending Rotation.  -rxStep rxStep 5.0 X-Axis Rotation Step.  -ry1 ry1 -180.0 Y-Axis Starting Rotation.  -ryn ryn 180.0 Y-Axis Ending Rotation.  -ryStep ryStep 5.0 Y-Axis Rotation Step.  -rz1 rz1 0.0 Z-Axis Starting Rotation.  -rxn rzn 180.0 Z-Axis Ending Rotation.  -rzStep rzStep 5.0 Z-Axis Rotation Step.