Scripts of the NMRPipe System
dynBasicExt.tcl: Create a Simple Extended Structure for a DYNAMO GMC Environment.

Usage:   dynBasicExt.tcl gmcDir outPDBName [args] Input: Flag Argument Default Description  -in inName gmcDir/random.pdb Output:  -print printCount 10 Status Printing Interval.  -report reportFlag List Final Atom Coord Info.  -graph Graph Enregy Terms (Default).  -nograph No Graphics.  -reset Reset Seg Name of Output to Blank.  -noreset Keep Seg Name of Output (Default).  -rasmol rasmolFlag 0 RasMol Drawing Interval.  -wireframe Use RasMol Wireframe Mode. Annealing Options:  -tInit tInit 4000 Annealing Temperature  -initSteps initSteps 1000 Initialization Step Count.  -highSteps highSteps 2000 High Temperature Step Count.  -coolSteps coolSteps 4000 Cooling Step Count.  -vdw Use Van der Waals Term (Default).  -novdw No Van der Waals Term. Backbone Angles (Protein Only):  -helix Reset Backbone Angles (Default).  -nohelix Leave Backbone Angles Unchanged.  -phi phiInit -64 Phi Angle for Backbone.  -psi psiInit -41 Psi Angle for Backbone.