Program simTimeND, argument checking enabled.
SimTimeND: ND Time Domain Simulation.
simTimeND hdrFlags > pipeFile
General Flags:
-in inName Peak Table Input.
-out outTemplate NMRPipe Output.
(Mandatory for 4D)
-axis ord [XYZA] Axis Order List.
-rms nVal [0.0] RMS of Noise to Add.
-iseed s [54321] Random Number Seed.
-ov Force Overwrite.
-nots No Time-Domain Scale.
-nofs No File Size Check.
-verb Verbose Mode On.
General Header Flags:
-fdata loc val... Adjust File Header.
-u1 -u2...-u5 User Parameters.
-ndim Number of Dimensions.
-tau Tau Value.
-day Day.
-month Month [1-12].
-year Year.
-hours Hours [0-23]
-mins Minutes [0-59]
-secs Seconds [0-59]
-temp Temperature.
-aq2D 2D Acquisition Code or Keyword:
0=Magnitude.
1=TPPI.
2=States.
3=Image.
-tpFlag 0=Not Transposed.
1=Transposed.
Header Labels:
-srcName Source File Name.
-operName Operator Name.
-userName User Name.
-comment Comment.
-title Title.
Axis-Specific Header Flags -xQ -yQ etc;
Default Values are zero:
-xN Actual Size in File. Pts Real plus Imag.
-xT Current Time Domain Size. Pts Real or Imag.
-xSW Full Spectral Width. Hz.
-xOBS Observe Frequency. MHz.
-xCAR Carrier Position. ppm.
-xLAB Axis Label. 8 Chars.
-xMODE Acquisition Mode Code or Keyword:
0=Complex,States,Complex-N,States-N.
0=States-TPPI,States-TPPI-N.
1=Real,TPPI.
2=Sequential,Bruker.
-xALT Sign Adjustment Code or Keyword:
0=Complex,States No Alternation Needed.
0=Real,TPPI No Alternation Needed.
1=Sequential,Bruker Real Alternation.
2=States-TPPI Complex Alternation.
With Negation of Imaginaries:
16=Complex-N No Alternation Needed.
16=States-N No Alternation Needed.
18=States-TPPI-N Complex Alternation.
Note: Default Sign Adjustment Mode is Automatically
Set by the Corresponding Acquisition Mode Keyword.
Axis-Specific Header Flags -xQ -yQ etc;
Not required for conversion; used to adjust header:
-xTD Original Time Domain Size. Pts.
-xMID Carrier Virtual Loc. Pts.
-xORIG Last Point Coord. Hz.
-xDIM Dimension Order.
2=Original X-Axis
1=Original Y-Axis
3=Original Z-Axis
4=Original A-Axis
-xFT Fourier Flag Code or Keyword:
0=Time Time-Domain Data.
1=Freq Frequency-Domain Data.
Special Acquisition-Axis Flags (no longer required):
-aqN Actual Size. Pts Real or Imag.
-aqMODE Acquisition Mode. 0=Complex.
1=Real.
2=Sequential.
Axis-Specific Processing Values -xQ -yQ etc:
-xAPOD Apodize Function SP EM GM TM TRI or NONE.
-xQ1 Apodize Parameter 1. Depends on Function.
-xQ2 Apodize Parameter 2. Depends on Function.
-xQ3 Apodize Parameter 3. Depends on Function.
-xC1 First Point Scale. Default is 1.0.
-xP0 Zero Order Phase. Degrees.
-xP1 First Order Phase. Degrees.
Nota Bene:
Simulation Freq Domain sizes -xN etc
should be specified as points R|I.
SimTime Error extracting arguments.
