Program bruk2pipe, argument checking enabled.
*** NMRPipe System Version 1.7 Rev 2000.012.14.42 ***
Bruk2Pipe: Bruker to NMRPipe Conversion.
bruk2pipe hdrFlags < brukSER > pipeFile
General Flags:
-in inName Bruker SER Input.
-out outTemplate NMRPipe Output.
-mem memMB [0] MByte Memory Buffer.
(Use 0 for Auto)
-ov Force Overwrite.
-noext No Extract Performed (Default).
-ext Extract Valid Points Only.
-nodir Suppress Directory Creation.
-nofs Suppress File Size Check.
-verb Verbose Mode On.
Format Flags:
-AMX SER is Bruker AMX Data (Default).
-DMX SER is Bruker DMX Data.
(Requires -decim flag.)
(Implies -ext flag.)
-AM SER is 3-Byte Bruker AM Data.
-bo bOff [0] Byte Offset for Input;
Commonly 768 to skip AM header.
-bad bPt [8e6] Bad Point Threshold;
(Use 0.0 for None)
Byte-Swap Options:
-swap Do Four-Byte Swap (Default).
-noswap Suppress Four-Byte Swap.
-aswap Do Four-Byte Swap.
(Meaning is System-dependant)
-noaswap Suppress Four-Byte Swap.
(Meaning is System-dependant)
Special Digital Filter Parameters from 'acqus':
-decim dVal [0] Bruker DECIM Value.
-dspfvs fVal [10] Bruker DSPFVS Value (10-13);
Default = 11 for DQD mode.
-skip sVal [4] Points to Skip in Head Correction.
(Use -1 for No Correction)
-zf Temporary Zero Fill for Speed.
(Default)
-nozf No Temporary Zero Fill.
Notes:
By default, byte-swap is OFF for Pentium systems,
and ON for other platforms.
General Header Flags:
-fdata loc val... Adjust File Header.
-u1 -u2...-u5 User Parameters.
-ndim Number of Dimensions.
-tau Tau Value.
-day Day.
-month Month [1-12].
-year Year.
-hours Hours [0-23]
-mins Minutes [0-59]
-secs Seconds [0-59]
-temp Temperature.
-aq2D 2D Acquisition Code or Keyword:
0=Magnitude.
1=TPPI.
2=States.
3=Image.
-tpFlag 0=Not Transposed.
1=Transposed.
Header Labels:
-srcName Source File Name.
-operName Operator Name.
-userName User Name.
-comment Comment.
-title Title.
Axis-Specific Header Flags -xQ -yQ etc;
Default Values are zero:
-xN Actual Size in File. Pts Real plus Imag.
-xT Current Time Domain Size. Pts Real or Imag.
-xSW Full Spectral Width. Hz.
-xOBS Observe Frequency. MHz.
-xCAR Carrier Position. ppm.
-xLAB Axis Label. 8 Chars.
-xMODE Acquisition Mode Code or Keyword:
0=Complex,States,Complex-N,States-N.
0=States-TPPI,States-TPPI-N.
1=Real,TPPI.
2=Sequential,Bruker.
-xALT Sign Adjustment Code or Keyword:
0=Complex,States No Alternation Needed.
0=Real,TPPI No Alternation Needed.
1=Sequential,Bruker Real Alternation.
2=States-TPPI Complex Alternation.
With Negation of Imaginaries:
16=Complex-N No Alternation Needed.
16=States-N No Alternation Needed.
18=States-TPPI-N Complex Alternation.
Note: Default Sign Adjustment Mode is Automatically
Set by the Corresponding Acquisition Mode Keyword.
Axis-Specific Header Flags -xQ -yQ etc;
Not required for conversion; used to adjust header:
-xTD Original Time Domain Size. Pts.
-xMID Carrier Virtual Loc. Pts.
-xORIG Last Point Coord. Hz.
-xDIM Dimension Order.
2=Original X-Axis
1=Original Y-Axis
3=Original Z-Axis
4=Original A-Axis
-xFT Fourier Flag Code or Keyword:
0=Time Time-Domain Data.
1=Freq Frequency-Domain Data.
Special Acquisition-Axis Flags (no longer required):
-aqN Actual Size. Pts Real or Imag.
-aqMODE Acquisition Mode. 0=Complex.
1=Real.
2=Sequential.
Axis-Specific Processing Values -xQ -yQ etc:
-xAPOD Apodize Function SP EM GM TM TRI or NONE.
-xQ1 Apodize Parameter 1. Depends on Function.
-xQ2 Apodize Parameter 2. Depends on Function.
-xQ3 Apodize Parameter 3. Depends on Function.
-xC1 First Point Scale. Default is 1.0.
-xP0 Zero Order Phase. Degrees.
-xP1 First Order Phase. Degrees.
Bruk2Pipe Error extracting arguments.
