Program bin2pipe, argument checking enabled.
*** NMRPipe System Version 1.7 Rev 2000.012.14.42 ***
Bin2Pipe: Four-Byte Binary to NMRPipe Conversion;
bin2pipe hdrFlags < binData > pipeFile
General Flags:
-in inName Four-Byte Binary Input.
-in inNameR inNameI Four-Byte Binary Input Pair.
-out outTemplate NMRPipe Output.
-ov Force Overwrite.
-nodir Suppress Directory Creation.
-nofs Suppress File Size Check.
-verb Verbose Mode On.
General Format Flags:
-bo bytOff [0] Byte Offset at Start of Input.
-bp bytPad [0] Bytes Between 1D Slices in Input.
-pad Pad missing data by zeros.
-nopad Suppress padding by zeros (Default).
-il Interleave Pairs of Input Planes;
(Default if two inputs are given).
-noil No Interleave of Input Planes;
(Default if one input is given).
-i2r Do Int-to-Real Conversion.
-neg Do Negation of Imaginary Data.
-ri Do Separation of Real/Imag.
-bad bPt [0.0] Bad Point Threshold;
(Use 0.0 for No Bad Point Adjust).
Byte-Swap Options:
-swap Do Four-Byte Swap.
-noswap Suppress Four-Byte Swap (Default).
-aswap Do Four-Byte Swap.
(Meaning is System-dependant)
-noaswap Suppress Four-Byte Swap.
(Meaning is System-dependant)
Specific Format Flags:
-alpha Same As: -bo 8704 -i2r -ri -neg -aswap
-alpha2 Same As: -bo 16384 -i2r -ri -neg -aswap
-lambda Same As: -bo -1 -ri -neg -aswap
-gsx Same As: -ri -i2r -aswap
-ex Same As: -ri -i2r -aswap
-chem Same As: -i2r -aswap
-ge Same As: -ri -noaswap
-ftOLD Same As: -bo 8 -bp 12 -ri -pad -noaswap
(Required byte offset may vary)
-ftNEW Same As: -bo 1036 -bp 4 -ri -pad -noaswap
(Required byte offset may vary)
Null Data Flags:
-noIn No Input Data; Use Zeros.
-noOut No Output Data; Header Only.
Parallel Processing: (Not yet implemented)
-par sListName Server List File Name.
-first firstPlane First Plane to process.
-last lastPlane Last Plane to process.
Notes:
1. JEOL GSX Phase-Sensitive input is specified
as a pair of file names.
2. JEOL LAMBDA mode (-lambda) will attempt to
find the byte offset from the JEOL header.
3. By default, byte-swap is ON for Pentium systems,
and OFF for other platforms.
General Header Flags:
-fdata loc val... Adjust File Header.
-u1 -u2...-u5 User Parameters.
-ndim Number of Dimensions.
-tau Tau Value.
-day Day.
-month Month [1-12].
-year Year.
-hours Hours [0-23]
-mins Minutes [0-59]
-secs Seconds [0-59]
-temp Temperature.
-aq2D 2D Acquisition Code or Keyword:
0=Magnitude.
1=TPPI.
2=States.
3=Image.
-tpFlag 0=Not Transposed.
1=Transposed.
Header Labels:
-srcName Source File Name.
-operName Operator Name.
-userName User Name.
-comment Comment.
-title Title.
Axis-Specific Header Flags -xQ -yQ etc;
Default Values are zero:
-xN Actual Size in File. Pts Real plus Imag.
-xT Current Time Domain Size. Pts Real or Imag.
-xSW Full Spectral Width. Hz.
-xOBS Observe Frequency. MHz.
-xCAR Carrier Position. ppm.
-xLAB Axis Label. 8 Chars.
-xMODE Acquisition Mode Code or Keyword:
0=Complex,States,Complex-N,States-N.
0=States-TPPI,States-TPPI-N.
1=Real,TPPI.
2=Sequential,Bruker.
-xALT Sign Adjustment Code or Keyword:
0=Complex,States No Alternation Needed.
0=Real,TPPI No Alternation Needed.
1=Sequential,Bruker Real Alternation.
2=States-TPPI Complex Alternation.
With Negation of Imaginaries:
16=Complex-N No Alternation Needed.
16=States-N No Alternation Needed.
18=States-TPPI-N Complex Alternation.
Note: Default Sign Adjustment Mode is Automatically
Set by the Corresponding Acquisition Mode Keyword.
Axis-Specific Header Flags -xQ -yQ etc;
Not required for conversion; used to adjust header:
-xTD Original Time Domain Size. Pts.
-xMID Carrier Virtual Loc. Pts.
-xORIG Last Point Coord. Hz.
-xDIM Dimension Order.
2=Original X-Axis
1=Original Y-Axis
3=Original Z-Axis
4=Original A-Axis
-xFT Fourier Flag Code or Keyword:
0=Time Time-Domain Data.
1=Freq Frequency-Domain Data.
Special Acquisition-Axis Flags (no longer required):
-aqN Actual Size. Pts Real or Imag.
-aqMODE Acquisition Mode. 0=Complex.
1=Real.
2=Sequential.
Axis-Specific Processing Values -xQ -yQ etc:
-xAPOD Apodize Function SP EM GM TM TRI or NONE.
-xQ1 Apodize Parameter 1. Depends on Function.
-xQ2 Apodize Parameter 2. Depends on Function.
-xQ3 Apodize Parameter 3. Depends on Function.
-xC1 First Point Scale. Default is 1.0.
-xP0 Zero Order Phase. Degrees.
-xP1 First Order Phase. Degrees.
Bin2Pipe Error extracting arguments.
