Scripts of the NMRPipe System
rama.tcl: display and adjust TALOS prediction results.

Directory Settings:
Flag Argument Default Description
 -talosDir mDir . TALOS Main Directory: TALOS_DIR.
 -predDir pDir pred Directory of existing predictions.
 -tabDir tDir tab Subdirectory of TALOS master tables.
Other Options:
 -in inName None Input shifts for predictions.
 -sum sumName Prediction summary input/output.
 -ref refName None PDB Reference (for testing).
 -db dbName TALOS triplet database file.
 -rand rcName Random coil shifts table.
 -count mc 10 Max match count per triplet.
 -cols cCount 10 Column Count for Sequence Display.
 -first resID1 First First residue to display.
 -last resIDN Last Last residue to display.
 -sd Display shift distributions.
 -ras Display PDB Reference using RasMol.
 -auto Display predictions in progress.
Typical inspection:
  rama.tcl -in
Inspection when a PDB structure is known:
  rama.tcl -in -ref ubiq.pdb
Inspection when a PDB structure is known, including Molecular Viewer:
  rama.tcl -in -ref ubiq.pdb -ras
Display predictions in progress while talos.tcl is running:
  rama.tcl -in -auto
See also:
  talos.tcl Creates predictions by shift homology.
  vina.tcl Summarize predictions in a single table.
  Option -ras requires that RasMol2 is installed and available
  via the command 'rasmol', and that no other instances of RasMol
  are using the screen.
RasMol Reference:
  Roger Sayle and E. James Milner-White.
  RasMol: Biomolecular graphics for all
  Trends in Biochemical Sciences (TIBS),
  September 1995, Vol. 20, No. 9, p. 374.

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