Scripts of the NMRPipe System
pipe2tiff.tcl: Convert a 2D NMRPipe All-Real Spectrum into a TIFF Image.

Flag Argument Default Description
 -in inName test.ft2 2D NMRPipe Format Input.
 -out outName Auto TIFF RGB Output (Grayscale, All channels will be equal).
 -min minVal Default Lower Spectral Height Range.
 -max maxVal Default Upper Spectral Height Range.
 -tiff16 Output 16-Bits per Channel.
  1. Use % for -max and -min to set values as a percentage of the largest absolute intensity (Example: -min 20%).
  2. Use "-out Auto" to create output name by adding/replacing input name extension with ".tif"

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last updated: Jul 24, 2011 / Webmaster